Research workbench
Solution structure of CXCL5
Analyse Solution structure of CXCL5 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2MGS
- Type
- protein
- Length
- 142 residues
- Chains
- 2
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- C-X-C motif chemokine 5
- UniProt
- P42830
- Pockets
- 5 · best druggability 0.61
Structure
solution nmr · 1 distinct chain · 21% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | C-X-C motif chemokine 5 | protein | 71 | 21% helix, 24% strand | P42830 |
Pockets
5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 196 | 0.61 | 0.82 | 29 | empty |
| 2 | 69 | 0.48 | 0.84 | 13 | empty |
| 3 | 65 | 0.36 | 0.78 | 17 | empty |
| 4 | 55 | 0.31 | 0.76 | 16 | empty |
| 5 | 57 | 0.31 | 0.76 | 15 | empty |
Interfaces
1 interface between chains.
- A–B · 863 Ų buried · 14 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 4 disulfide (disulfide).
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P42830
- Elsewhere: RCSB PDB 2MGS · PDBe 2MGS · UniProt P42830
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