Research workbench
Structural basis of the non-coding RNA rsmz acting as protein sponge: conformer L of RSMZ(1-72)/RSME(DIMER) 1TO3 complex
Analyse Structural basis of the non-coding RNA rsmz acting as protein sponge: conformer… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2MF0
- Type
- protein + RNA
- Length
- 426 residues
- Chains
- 7
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Carbon storage regulator homolog; RNA_(72-mer)
- UniProt
- Q4KEY0
- Pockets
- 1 · best druggability 0.67
Structure
solution nmr · 2 distinct chains · 12% helix, 49% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F | Carbon storage regulator homolog | protein | 59 | 12% helix, 49% strand | Q4KEY0 |
| G | RNA_(72-mer) | rna | 72 | — | — |
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1004 | 0.67 | 0.73 | 61 | empty |
Interfaces
9 interfaces between chains.
- C–D · 2047 Ų buried · 35 hydrogen bonds · protein-protein
- E–F · 1944 Ų buried · 37 hydrogen bonds · protein-protein
- A–B · 1885 Ų buried · 31 hydrogen bonds · protein-protein
- B–G · 1260 Ų buried · 36 hydrogen bonds · protein-nucleic
- D–G · 1219 Ų buried · 35 hydrogen bonds · protein-nucleic
Compared structures
- 2MF0 · Structural basis of the non-coding RNA RsmZ acting as protein sponge: Conformer L of… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q4KEY0
- Elsewhere: RCSB PDB 2MF0 · PDBe 2MF0 · UniProt Q4KEY0
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