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NMR solution structure of msp-P56S DOMAIN/VAPB in dpc

Analyse NMR solution structure of msp-P56S DOMAIN/VAPB in dpc in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2MDK
Type: protein
Length: 125 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Vesicle-associated membrane protein-associated protein B/C
UniProt: O95292
Pockets: 1 · best druggability 0.70

Structure

solution nmr · 1 distinct chain · 30% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Vesicle-associated membrane protein-associated protein B/C	protein	125	30% helix, 0% strand	O95292

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	860	0.70	0.76	75	empty

Compared structures

2MDK · NMR Solution Structure of MSP-P56S Domain/VAPB in DPC · the same entry in another collection · chain A against A, TM-score 1.00
O95292 · AlphaFold monomer V2.0 prediction for vesicle-associated membrane protein-associated… · a predicted model of the same protein · chain A against A, TM-score 0.27

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O95292
Elsewhere: RCSB PDB 2MDK · PDBe 2MDK · UniProt O95292

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