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Solution structure of OPA60 from N. gonorrhoeae

Analyse Solution structure of OPA60 from N. gonorrhoeae in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2MAF
Type: protein
Length: 233 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Opacity protein OPA60
UniProt: Q04884
Pockets: 4 · best druggability 0.74

Structure

solution nmr · 1 distinct chain · 0% helix, 34% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Opacity protein OPA60	protein	233	0% helix, 34% strand	Q04884

Pockets

4 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	381	0.74	0.85	60	empty
2	217	0.72	0.88	37	empty
3	278	0.55	0.76	38	empty
4	55	0.27	0.74	15	empty

Compared structures

2MAF · Solution structure of opa60 from n. gonorrhoeae · the same entry in another collection · chain A against A, TM-score 1.00
Q04884 · AlphaFold monomer V2.0 prediction for opacity protein OPA60 (Q04884) · a predicted model of the same protein · chain A against A, TM-score 0.51

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q04884
Elsewhere: RCSB PDB 2MAF · PDBe 2MAF · UniProt Q04884

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