Research workbench
Blue light-absorbing state of tepixj, an active cyanobacteriochrome domain
Analyse Blue light-absorbing state of tepixj, an active cyanobacteriochrome domain in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2M7U
- Type
- protein
- Length
- 165 residues
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Methyl-accepting chemotaxis protein
- UniProt
- Q8DLC7
- Ligands
- VRB
- Pockets
- 2 · best druggability 0.64
Structure
solution nmr · 1 distinct chain · 36% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Methyl-accepting chemotaxis protein | protein | 165 | 36% helix, 20% strand | Q8DLC7 |
Ligands and binding sites
- VRB · Phycoviolobilin, blue light-absorbing form · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 265 | 0.64 | 0.81 | 35 | VRB |
| 2 | 68 | 0.30 | 0.73 | 15 | empty |
Modifications
Observed in the structure: 2 covalent (covalent ligand).
Compared structures
- 2M7U · Blue Light-Absorbing State of TePixJ, an Active Cyanobacteriochrome Domain · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8DLC7
- Elsewhere: RCSB PDB 2M7U · PDBe 2M7U · UniProt Q8DLC7
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