Research workbench
Parvovirus (densovirus) from galleria mellonella
Analyse Parvovirus (densovirus) from galleria mellonella in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1DNV
- Type
- protein
- Length
- 415 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Galleria mellonella densovirus capsid protein
- UniProt
- Q90125
- Pockets
- 6 · best druggability 0.60
Structure
x-ray diffraction · 1 distinct chain · 6% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Galleria mellonella densovirus capsid protein | protein | 415 | 6% helix, 23% strand | Q90125 |
Pockets
6 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 280 | 0.60 | 0.79 | 35 | empty |
| 2 | 129 | 0.59 | 0.84 | 28 | empty |
| 3 | 195 | 0.48 | 0.75 | 33 | empty |
| 4 | 147 | 0.40 | 0.73 | 23 | empty |
| 5 | 51 | 0.40 | 0.82 | 16 | empty |
Modifications
Observed in the structure: 1 isopeptide (isopeptide).
Compared structures
- 1DNV · Parvovirus (densovirus) from galleria mellonella · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q90125
- Elsewhere: RCSB PDB 1DNV · PDBe 1DNV · UniProt Q90125
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