Research workbench
African swine fever virus pol X in the ternary complex with mgdgtp and DNA
Analyse African swine fever virus pol X in the ternary complex with mgdgtp and DNA in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2M2V
- Type
- protein
- Length
- 174 residues
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Repair DNA polymerase X
- EC
- 2.7.7.7
- UniProt
- P42494
- Pockets
- 3 · best druggability 0.74
Structure
solution nmr · 1 distinct chain · 33% helix, 33% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Repair DNA polymerase X (EC 2.7.7.7) | protein | 174 | 33% helix, 33% strand | P42494 |
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 66 | 0.74 | 0.97 | 19 | empty |
| 2 | 195 | 0.54 | 0.78 | 27 | empty |
| 3 | 60 | 0.28 | 0.74 | 13 | empty |
Compared structures
- 2M2V · African Swine Fever Virus Pol X in the ternary complex with MgdGTP and DNA · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P42494
- Elsewhere: RCSB PDB 2M2V · PDBe 2M2V · UniProt P42494
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