Research workbench
NMR structure of the protein NB7890A from shewanella sp
Analyse NMR structure of the protein NB7890A from shewanella sp in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2LYY
- Type
- protein
- Length
- 192 residues
- Chains
- 2
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uncharacterized protein
- Pockets
- 3 · best druggability 0.31
Structure
solution nmr · 1 distinct chain · 75% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Uncharacterized protein | protein | 96 | 75% helix, 0% strand | — |
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 55 | 0.31 | 0.76 | 13 | empty |
| 2 | 57 | 0.26 | 0.72 | 11 | empty |
| 3 | 54 | 0.25 | 0.72 | 11 | empty |
Interfaces
1 interface between chains.
- A–B · 3226 Ų buried · 21 hydrogen bonds · protein-protein
Compared structures
- 2LYY · NMR structure of the protein NB7890A from Shewanella sp · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 2LYY · PDBe 2LYY
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