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The crystal structure of D(GGATGGGAG). an essential part of the binding site for transcription factor iiia
Analyse The crystal structure of D(GGATGGGAG). an essential part of the binding site… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1DN6
- Type
- DNA
- Length
- 18 nucleotides
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA (5'-D(*GP*GP*AP*TP*GP*GP*GP*AP*G)-3'); DNA (5'-D(*CP*TP*CP*CP*CP*AP*TP*CP*C)-3')
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA (5'-D(*GP*GP*AP*TP*GP*GP*GP*AP*G)-3') | dna | 9 | — | — |
| B | DNA (5'-D(*CP*TP*CP*CP*CP*AP*TP*CP*C)-3') | dna | 9 | — | — |
Interfaces
1 interface between chains.
- A–B · 432 Ų buried · 61 hydrogen bonds · nucleic-nucleic
Compared structures
- 1DN6 · The crystal structure of D(GGATGGGAG). an essential part of the binding site for… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1DN6 · PDBe 1DN6
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