Research workbench
Dimeric pil-E G-quadruplex DNA from neisseria gonorrhoeae, NMR 11 structures
Analyse Dimeric pil-E G-quadruplex DNA from neisseria gonorrhoeae, NMR 11 structures in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2LXV
- Type
- DNA
- Length
- 32 nucleotides
- Chains
- 2
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 5'-D(*GP*GP*GP*TP*GP*GP*GP*TP*TP*GP*GP*GP*TP*GP*GP
- Pockets
- 2 · best druggability 0.32
Structure
solution nmr · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | 5'-D(*GP*GP*GP*TP*GP*GP*GP*TP*TP*GP*GP*GP*TP*GP*GP | dna | 16 | — | — |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 53 | 0.32 | 0.78 | 9 | empty |
| 2 | 52 | 0.30 | 0.77 | 9 | empty |
Interfaces
1 interface between chains.
- A–B · 538 Ų buried · 18 hydrogen bonds · nucleic-nucleic
Compared structures
- 2LXV · Dimeric pil-e g-quadruplex dna from neisseria gonorrhoeae, NMR 11 structures · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 2LXV · PDBe 2LXV
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