Research workbench
Solution structure of a parallel-stranded oligoisoguanine DNA pentaplex formed by D(T(IG)4T) in the presence of cs ions
Analyse Solution structure of a parallel-stranded oligoisoguanine DNA pentaplex formed… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2LUJ
- Type
- DNA
- Length
- 30 nucleotides
- Chains
- 5
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA (5'-D(*TP*(IGU)P*(IGU)P*(IGU)P*(IGU)P*T)-3')
Structure
solution nmr · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E | DNA (5'-D(*TP*(IGU)P*(IGU)P*(IGU)P*(IGU)P*T)-3') | dna | 6 | — | — |
Interfaces
10 interfaces between chains.
- C–D · 391 Ų buried · 28 hydrogen bonds · nucleic-nucleic
- A–B · 389 Ų buried · 27 hydrogen bonds · nucleic-nucleic
- D–E · 387 Ų buried · 27 hydrogen bonds · nucleic-nucleic
- A–E · 387 Ų buried · 29 hydrogen bonds · nucleic-nucleic
- B–C · 384 Ų buried · 29 hydrogen bonds · nucleic-nucleic
Modifications
Observed in the structure: 20 modified (nucleotide modification).
Compared structures
- 2LUJ · Solution structure of a parallel-stranded oligoisoguanine DNA pentaplex formed by… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 2LUJ · PDBe 2LUJ
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