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Solution NMR structure of YDBC:DT19G1 complex. northeast structural genomics consortium (nesg) target KR150

Analyse Solution NMR structure of YDBC:DT19G1 complex. northeast structural genomics… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2LTT
Type: protein + DNA
Length: 162 residues
Chains: 3
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Putative uncharacterized protein ydbc; DNA (5'…
UniProt: Q9CIP3
Pockets: 3 · best druggability 0.60

Structure

solution nmr · 2 distinct chains · 19% helix, 43% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Putative uncharacterized protein ydbc	protein	74	19% helix, 43% strand	Q9CIP3
C	DNA (5'- D(TPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTP*T)-3')	dna	14	—	—

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	382	0.60	0.76	35	empty
2	70	0.43	0.81	18	empty
3	67	0.41	0.80	19	empty

Interfaces

3 interfaces between chains.

B–C · 1105 Å² buried · 33 hydrogen bonds · protein-nucleic
A–C · 1086 Å² buried · 35 hydrogen bonds · protein-nucleic
A–B · 1000 Å² buried · 6 hydrogen bonds · protein-protein

Compared structures

2LTT · Solution NMR Structure of YdbC:dT19G1 complex. Northeast Structural Genomics Consortium… · the same entry in another collection · chain A against A, TM-score 1.00

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Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9CIP3
Elsewhere: RCSB PDB 2LTT · PDBe 2LTT · UniProt Q9CIP3

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