Research workbench
Solution NMR structure of apo ydbc from lactococcus lactis, northeast structural genomics consortium (nesg) target KR150
Analyse Solution NMR structure of apo ydbc from lactococcus lactis, northeast… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2LTD
- Type
- protein
- Length
- 160 residues
- Chains
- 2
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uncharacterized protein ydbc
- UniProt
- Q9CIP3
- Pockets
- 2 · best druggability 0.43
Structure
solution nmr · 1 distinct chain · 18% helix, 49% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Uncharacterized protein ydbc | protein | 80 | 18% helix, 49% strand | Q9CIP3 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 82 | 0.43 | 0.79 | 16 | empty |
| 2 | 78 | 0.35 | 0.75 | 18 | empty |
Interfaces
1 interface between chains.
- A–B · 1455 Ų buried · 14 hydrogen bonds · protein-protein
Compared structures
- 2LTD · Solution NMR Structure of apo YdbC from Lactococcus lactis, Northeast Structural Genomics… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9CIP3
- Elsewhere: RCSB PDB 2LTD · PDBe 2LTD · UniProt Q9CIP3
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