Research workbench
Structure of decorbin-binding protein a from borrelia burgdorferi
Analyse Structure of decorbin-binding protein a from borrelia burgdorferi in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2LQU
- Type
- protein
- Length
- 168 residues
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Decorin-binding protein a
- UniProt
- O50917
- Pockets
- 3 · best druggability 0.71
Structure
solution nmr · 1 distinct chain · 69% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Decorin-binding protein a | protein | 168 | 69% helix, 0% strand | O50917 |
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 116 | 0.71 | 0.91 | 28 | empty |
| 2 | 195 | 0.52 | 0.77 | 29 | empty |
| 3 | 82 | 0.38 | 0.77 | 15 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 2LQU · Structure of decorbin-binding protein A from Borrelia burgdorferi · the same entry in another collection · chain A against A, TM-score 1.00
- O50917 · AlphaFold monomer V2.0 prediction for decorin-binding protein a (O50917) · a predicted model of the same protein · chain A against A, TM-score 0.81
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O50917
- Elsewhere: RCSB PDB 2LQU · PDBe 2LQU · UniProt O50917
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