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Solution structures of rada intein from pyrococcus horikoshii

Analyse Solution structures of rada intein from pyrococcus horikoshii in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2LQM
Type: protein
Length: 174 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Pho rada intein
UniProt: O58001
Pockets: 1 · best druggability 0.46

Structure

solution nmr · 1 distinct chain · 9% helix, 53% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Pho rada intein	protein	174	9% helix, 53% strand	O58001

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	89	0.46	0.80	16	empty

Compared structures

2LQM · Solution Structures of RadA intein from Pyrococcus horikoshii · the same entry in another collection · chain A against A, TM-score 1.00
O58001 · AlphaFold monomer V2.0 prediction for DNA repair and recombination protein rada (O58001) · a predicted model of the same protein · chain A against A, TM-score 0.92

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O58001
Elsewhere: RCSB PDB 2LQM · PDBe 2LQM · UniProt O58001

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