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Structural characterization of an LPA1 second extracellular loop mimetic with a self-assembling coiled-coil folding constraint

Analyse Structural characterization of an LPA1 second extracellular loop mimetic with a… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2LQ4
Type: protein
Length: 80 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Lysophosphatidic acid receptor 1
Pockets: 1 · best druggability 0.31

Structure

solution nmr · 1 distinct chain · 43% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
p	Lysophosphatidic acid receptor 1	protein	80	43% helix, 0% strand	—

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	85	0.31	0.72	15	empty

Compared structures

2LQ4 · Structural Characterization of an LPA1 Second Extracellular Loop Mimetic with a… · the same entry in another collection · chain p against p, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 2LQ4 · PDBe 2LQ4

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