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Low resolution structure of RNA-binding subunit of the tramp complex

Analyse Low resolution structure of RNA-binding subunit of the tramp complex in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2LLI
Type: protein
Length: 124 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Protein AIR2
UniProt: Q12476
Ligands: ZN
Pockets: 1 · best druggability 0.35

Structure

solution nmr · 1 distinct chain · 2% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Protein AIR2	protein	124	2% helix, 0% strand	Q12476

Ligands and binding sites

ZN · Zinc ion · metal · 5 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	74	0.35	0.76	21	empty

Compared structures

2LLI · Low resolution structure of RNA-binding subunit of the TRAMP complex · the same entry in another collection · chain A against A, TM-score 1.00
Q12476 · AlphaFold monomer V2.0 prediction for protein AIR2 (Q12476) · a predicted model of the same protein · chain A against A, TM-score 0.25

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q12476
Elsewhere: RCSB PDB 2LLI · PDBe 2LLI · UniProt Q12476

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