Research workbench
Structure of the influenza AM2-BM2 chimeric channel bound to rimantadine
Analyse Structure of the influenza AM2-BM2 chimeric channel bound to rimantadine in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2LJC
- Type
- protein
- Length
- 120 residues
- Chains
- 4
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- M2 protein, BM2 protein chimera
- UniProt
- Q9YP62, B4UQM4
- Ligands
- RIM
- Pockets
- 1 · best druggability 0.85
Structure
solution nmr · 1 distinct chain · 87% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D | M2 protein, BM2 protein chimera | protein | 30 | 87% helix, 0% strand | Q9YP62, B4UQM4 |
Ligands and binding sites
- RIM · Rimantadine · ligand · chains A, B, C, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 798 | 0.85 | 0.88 | 74 | RIM |
Interfaces
5 interfaces between chains.
- A–D · 556 Ų buried · 5 hydrogen bonds · protein-protein
- A–B · 526 Ų buried · 2 hydrogen bonds · protein-protein
- B–C · 478 Ų buried · 2 hydrogen bonds · protein-protein
- C–D · 453 Ų buried · 1 hydrogen bond · protein-protein
- A–C · 21 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 2LJC · Structure of the influenza AM2-BM2 chimeric channel bound to rimantadine · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9YP62
- Every structure of UniProt B4UQM4
- Elsewhere: RCSB PDB 2LJC · PDBe 2LJC · UniProt Q9YP62 · UniProt B4UQM4
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