Research workbench
Solution NMR structure of diiron protein in presence of 2 eq ZN2+, northeast structural genomics consortium target OR21
Analyse Solution NMR structure of diiron protein in presence of 2 eq ZN2+, northeast… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2LFD
- Type
- protein
- Length
- 115 residues
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Diiron protein
- Ligands
- ZN
- Pockets
- 2 · best druggability 0.57
Structure
solution nmr · 1 distinct chain · 84% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Diiron protein | protein | 115 | 84% helix, 0% strand | — |
Ligands and binding sites
- ZN · Zinc ion · metal · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 153 | 0.57 | 0.82 | 19 | empty |
| 2 | 61 | 0.29 | 0.74 | 13 | empty |
Compared structures
- 2LFD · Solution NMR structure of Diiron protein in presence of 2 eq Zn2+, Northeast Structural… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 2LFD · PDBe 2LFD
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