Research workbench
Structure of a monomeric mutant of the HIV-1 capsid protein
Analyse Structure of a monomeric mutant of the HIV-1 capsid protein in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2LF4
- Type
- protein
- Length
- 232 residues
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Gag polyprotein
- UniProt
- Q72497
- Pockets
- 3 · best druggability 0.45
Structure
solution nmr · 1 distinct chain · 58% helix, 3% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Gag polyprotein | protein | 232 | 58% helix, 3% strand | Q72497 |
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 91 | 0.45 | 0.79 | 24 | empty |
| 2 | 70 | 0.41 | 0.80 | 21 | empty |
| 3 | 91 | 0.39 | 0.76 | 26 | empty |
Compared structures
- 2LF4 · Structure of a monomeric mutant of the HIV-1 capsid protein · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q72497
- Elsewhere: RCSB PDB 2LF4 · PDBe 2LF4 · UniProt Q72497
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