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Structure of the cytidine repressor DNA-binding domain; an alternate calculation

Analyse Structure of the cytidine repressor DNA-binding domain; an alternate calculation in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2LCV
Type: protein
Length: 47 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Hth-type transcriptional repressor cytr
UniProt: P0ACN7
Pockets: 1 · best druggability 0.47

Structure

solution nmr · 1 distinct chain · 57% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Hth-type transcriptional repressor cytr	protein	47	57% helix, 0% strand	P0ACN7

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	97	0.47	0.80	21	empty

Compared structures

2LCV · Structure of the Cytidine Repressor DNA-Binding Domain; an alternate calculation · the same entry in another collection · chain A against A, TM-score 1.00
P0ACN7 · AlphaFold monomer V2.0 prediction for hth-type transcriptional repressor cytr (P0ACN7) · a predicted model of the same protein · chain A against A, TM-score 0.56

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P0ACN7
Elsewhere: RCSB PDB 2LCV · PDBe 2LCV · UniProt P0ACN7

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