Research workbench
Structure of the human shwachman-bodian-diamond syndrome (sbds) protein
Analyse Structure of the human shwachman-bodian-diamond syndrome (sbds) protein in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2L9N
- Type
- protein
- Length
- 250 residues
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ribosome maturation protein sbds
- UniProt
- Q9Y3A5
- Pockets
- 3 · best druggability 0.46
Structure
solution nmr · 1 distinct chain · 40% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ribosome maturation protein sbds | protein | 250 | 40% helix, 21% strand | Q9Y3A5 |
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 81 | 0.46 | 0.81 | 14 | empty |
| 2 | 74 | 0.43 | 0.80 | 16 | empty |
| 3 | 52 | 0.28 | 0.74 | 17 | empty |
Compared structures
- 2L9N · Structure of the human Shwachman-Bodian-Diamond syndrome (SBDS) protein · the same entry in another collection · chain A against A, TM-score 1.00
- Q9Y3A5 · AlphaFold monomer V2.0 prediction for ribosome maturation protein sbds (Q9Y3A5) · a predicted model of the same protein · chain A against A, TM-score 0.51
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9Y3A5
- Elsewhere: RCSB PDB 2L9N · PDBe 2L9N · UniProt Q9Y3A5
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