Research workbench
Solution structure of htra PDZ domain from streptococcus pneumoniae
Analyse Solution structure of htra PDZ domain from streptococcus pneumoniae in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2L97
- Type
- protein
- Length
- 127 residues
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative serine protease
- UniProt
- O06670
- Pockets
- 3 · best druggability 0.67
Structure
solution nmr · 1 distinct chain · 16% helix, 25% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative serine protease | protein | 127 | 16% helix, 25% strand | O06670 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 129 | 0.67 | 0.88 | 27 | empty |
| 2 | 57 | 0.34 | 0.77 | 14 | empty |
| 3 | 50 | 0.28 | 0.75 | 12 | empty |
Compared structures
- 2L97 · Solution structure of HtrA PDZ domain from Streptococcus pneumoniae · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O06670
- Elsewhere: RCSB PDB 2L97 · PDBe 2L97 · UniProt O06670
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