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NMR structure of the cytidine repressor DNA binding domain in presence of operator half-site DNA

Analyse NMR structure of the cytidine repressor DNA binding domain in presence of… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2L8N
Type: protein
Length: 47 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Transcriptional repressor cytr
UniProt: Q0TAD0
Pockets: 1 · best druggability 0.51

Structure

solution nmr · 1 distinct chain · 57% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Transcriptional repressor cytr	protein	47	57% helix, 0% strand	Q0TAD0

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	119	0.51	0.81	21	empty

Compared structures

2L8N · NMR structure of the cytidine repressor DNA binding domain in presence of operator… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q0TAD0
Elsewhere: RCSB PDB 2L8N · PDBe 2L8N · UniProt Q0TAD0

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