Research workbench
Solution structure of the zinc finger domain of USP13
Analyse Solution structure of the zinc finger domain of USP13 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2L80
- Type
- protein
- Length
- 114 residues
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ubiquitin carboxyl-terminal hydrolase 13
- UniProt
- Q92995
- Ligands
- ZN
- Pockets
- 1 · best druggability 0.57
Structure
solution nmr · 1 distinct chain · 18% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ubiquitin carboxyl-terminal hydrolase 13 | protein | 114 | 18% helix, 16% strand | Q92995 |
Ligands and binding sites
- ZN · Zinc ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 57 | 0.57 | 0.89 | 15 | empty |
Compared structures
- 2L80 · Solution Structure of the Zinc Finger Domain of USP13 · the same entry in another collection · chain A against A, TM-score 1.00
- Q92995 · AlphaFold monomer V2.0 prediction for ubiquitin carboxyl-terminal hydrolase 13 (Q92995) · a predicted model of the same protein · chain A against A, TM-score 0.81
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q92995
- Elsewhere: RCSB PDB 2L80 · PDBe 2L80 · UniProt Q92995
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