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NMR structure analysis of the DNA nine base pair duplex D(CATGAGTAC) D(GTAC(NP3)CATG)

Analyse NMR structure analysis of the DNA nine base pair duplex D(CATGAGTAC)… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1DK6
Type: DNA
Length: 18 nucleotides
Chains: 2
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: 5'-D(CP*AP*TP*GP*AP*GP*TP*AP*CP*)-3'; 5'-D(GP*TP*AP*CP*(NP3)P*CP*AP*TP*GP*)-3'

Structure

solution nmr · 2 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	5'-D(CPAPTPGPAPGPTPAPCP*)-3'	dna	9	—	—
B	5'-D(GPTPAPCP(NP3)PCPAPTPGP*)-3'	dna	9	—	—

Interfaces

1 interface between chains.

A–B · 407 Å² buried · 54 hydrogen bonds · nucleic-nucleic

Modifications

Observed in the structure: 1 modified (nucleotide modification).

Compared structures

1DK6 · NMR structure analysis of the DNA nine base pair duplex D(CATGAGTAC) D(GTAC(NP3)CATG) · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 1DK6 · PDBe 1DK6

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