Research workbench
Solution structure of a PREQ1 riboswitch (class I) aptamer bound to PREQ1
Analyse Solution structure of a PREQ1 riboswitch (class I) aptamer bound to PREQ1 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2L1V
- Type
- RNA
- Length
- 36 nucleotides
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 36-mer
- Ligands
- PRF
- Pockets
- 2 · best druggability 0.40
Structure
solution nmr · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 36-mer | rna | 36 | — | — |
Ligands and binding sites
- PRF · 7-deaza-7-aminomethyl-guanine · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 69 | 0.40 | 0.80 | 14 | PRF |
| 2 | 57 | 0.23 | 0.71 | 8 | empty |
Compared structures
- 2L1V · Solution structure of a preQ1 riboswitch (Class I) aptamer bound to preQ1 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 2L1V · PDBe 2L1V
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.