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Zinc to cadmium replacement in the a. thaliana superman CYS2HIS2 zinc finger induces structural rearrangements of typical DNA base determinant positions

Analyse Zinc to cadmium replacement in the a. thaliana superman CYS2HIS2 zinc finger… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2L1O
Type: protein
Length: 37 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Transcriptional regulator superman
UniProt: Q38895
Ligands: ACE, CD, NH2

Structure

solution nmr · 1 distinct chain · 22% helix, 11% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Transcriptional regulator superman	protein	37	22% helix, 11% strand	Q38895

Ligands and binding sites

ACE · Acetyl group · ligand · chains A
CD · Cadmium ion · metal · chains A
NH2 · Amino group · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Modifications

Observed in the structure: 1 covalent (covalent ligand).

Compared structures

2L1O · Zinc to cadmium replacement in the A. thaliana SUPERMAN Cys2His2 zinc finger induces… · the same entry in another collection · chain A against A, TM-score 1.00
Q38895 · AlphaFold monomer V2.0 prediction for transcriptional regulator superman (Q38895) · a predicted model of the same protein · chain A against A, TM-score 0.53

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q38895
Elsewhere: RCSB PDB 2L1O · PDBe 2L1O · UniProt Q38895

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