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Atomic resolution structure of scorpion alpha-like toxin bmk M1 in a new crystal form

Analyse Atomic resolution structure of scorpion alpha-like toxin bmk M1 in a new… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1DJT
Type: protein
Length: 128 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Alpha-like neurotoxin bmk M1
UniProt: P45697
Pockets: 2 · best druggability 0.41

Structure

x-ray diffraction · 1 distinct chain · 16% helix, 42% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Alpha-like neurotoxin bmk M1	protein	64	16% helix, 42% strand	P45697

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	84	0.41	0.78	19	empty
2	61	0.28	0.74	15	empty

Interfaces

1 interface between chains.

A–B · 602 Å² buried · 10 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 8 disulfide (disulfide).

Compared structures

1DJT · Atomic resolution structure of scorpion alpha-like toxin bmk M1 in a new crystal form · the same entry in another collection · chain A against A, TM-score 1.00
P45697 · AlphaFold monomer V2.0 prediction for alpha-like toxin bmk M1 (P45697) · a predicted model of the same protein · chain A against A, TM-score 0.95

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P45697
Elsewhere: RCSB PDB 1DJT · PDBe 1DJT · UniProt P45697

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