Research workbench
Supramolecular protein structure determination by site-specific long- range intermolecular solid state NMR spectroscopy
Analyse Supramolecular protein structure determination by site-specific long- range… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2KWD
- Type
- protein
- Length
- 280 residues
- Chains
- 5
- Method
- solid-state nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Immunoglobulin G-binding protein G
- UniProt
- P19909
- Pockets
- 1 · best druggability 0.33
Structure
solid-state nmr · 1 distinct chain · 27% helix, 43% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E | Immunoglobulin G-binding protein G | protein | 56 | 27% helix, 43% strand | P19909 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 74 | 0.33 | 0.75 | 13 | empty |
Interfaces
4 interfaces between chains.
- A–B · 450 Ų buried · 7 hydrogen bonds · protein-protein
- A–C · 386 Ų buried · 4 hydrogen bonds · protein-protein
- A–E · 354 Ų buried · 12 hydrogen bonds · protein-protein
- A–D · 350 Ų buried · 10 hydrogen bonds · protein-protein
Compared structures
- 2KWD · Supramolecular Protein Structure Determination by Site-Specific Long-Range Intermolecular… · the same entry in another collection · chain A against A, TM-score 1.00
- P19909 · AlphaFold monomer V2.0 prediction for immunoglobulin G-binding protein G (P19909) · a predicted model of the same protein · chain A against A, TM-score 0.91
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P19909
- Elsewhere: RCSB PDB 2KWD · PDBe 2KWD · UniProt P19909
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