Research workbench

The NMR structure of the autophagy-related protein ATG8

Analyse The NMR structure of the autophagy-related protein ATG8 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2KWC
Type: protein
Length: 116 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Autophagy-related protein 8
UniProt: P38182
Pockets: 2 · best druggability 0.38

Structure

solution nmr · 1 distinct chain · 28% helix, 19% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Autophagy-related protein 8	protein	116	28% helix, 19% strand	P38182

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	118	0.38	0.74	21	empty
2	50	0.32	0.78	14	empty

Compared structures

2KWC · The NMR structure of the autophagy-related protein Atg8 · the same entry in another collection · chain A against A, TM-score 1.00
P38182 · AlphaFold monomer V2.0 prediction for autophagy-related protein 8 (P38182) · a predicted model of the same protein · chain A against A, TM-score 0.89

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P38182
Elsewhere: RCSB PDB 2KWC · PDBe 2KWC · UniProt P38182

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.