Research workbench
Spatial structure of lch-beta peptide from two-component lantibiotic lichenicidin VK21
Analyse Spatial structure of lch-beta peptide from two-component lantibiotic… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2KTO
- Type
- protein
- Length
- 31 residues
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Lchb
- UniProt
- P86476
- Ligands
- 2KT
Structure
solution nmr · 1 distinct chain · 45% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Lchb | protein | 31 | 45% helix, 0% strand | P86476 |
Ligands and binding sites
- 2KT · 2-ketobutyric acid · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Modifications
Observed in the structure: 9 modified, 2 d-amino, 1 covalent (nonstandard, D-amino acid, covalent ligand).
Compared structures
- 2KTO · Spatial structure of Lch-beta peptide from two-component lantibiotic Lichenicidin VK21 · the same entry in another collection · chain A against A, TM-score 1.00
- P86476 · AlphaFold monomer V2.0 prediction for lantibiotic lichenicidin VK21 A2 (P86476) · a predicted model of the same protein · chain A against A, TM-score 0.35
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P86476
- Elsewhere: RCSB PDB 2KTO · PDBe 2KTO · UniProt P86476
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