Research workbench

Backbone structure of the membrane domain of E. COLI histidine kinase receptor kdpd, center for structures of membrane proteins (csmp) target 4312C

Analyse Backbone structure of the membrane domain of E. COLI histidine kinase receptor… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2KSF
Type: protein
Length: 107 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Sensor protein kdpd
EC: 2.7.13.3
UniProt: P21865
Pockets: 1 · best druggability 0.76

Structure

solution nmr · 1 distinct chain · 64% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Sensor protein kdpd (EC 2.7.13.3)	protein	107	64% helix, 0% strand	P21865

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	280	0.76	0.88	39	empty

Compared structures

2KSF · Backbone structure of the membrane domain of E. coli histidine kinase receptor KdpD… · the same entry in another collection · chain A against A, TM-score 1.00
P21865 · AlphaFold monomer V2.0 prediction for sensor protein kdpd (P21865) · a predicted model of the same protein · chain A against A, TM-score 0.41

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P21865
Elsewhere: RCSB PDB 2KSF · PDBe 2KSF · UniProt P21865

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.