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Solution structure of helicobacter pylori slyd

Analyse Solution structure of helicobacter pylori slyd in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2KR7
Type: protein
Length: 151 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Fkbp-type peptidyl-prolyl cis-trans isomerase slyd
EC: 5.2.1.8
UniProt: O25748
Pockets: 2 · best druggability 0.35

Structure

solution nmr · 1 distinct chain · 9% helix, 42% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Fkbp-type peptidyl-prolyl cis-trans isomerase slyd (EC 5.2.1.8)	protein	151	9% helix, 42% strand	O25748

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	71	0.35	0.76	16	empty
2	73	0.35	0.76	15	empty

Compared structures

2KR7 · solution structure of Helicobacter pylori SlyD · the same entry in another collection · chain A against A, TM-score 1.00
O25748 · AlphaFold monomer V2.0 prediction for fkbp-type peptidyl-prolyl cis- trans isomerase slyd… · a predicted model of the same protein · chain A against A, TM-score 0.47

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O25748
Elsewhere: RCSB PDB 2KR7 · PDBe 2KR7 · UniProt O25748

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