Research workbench
Structure of 2'F-ANA/RNA hybrid duplex
Analyse Structure of 2'F-ANA/RNA hybrid duplex in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2KP4
- Type
- DNA + RNA
- Length
- 20 nucleotides
- Chains
- 2
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA (5'-D(*(GFL)P*(CFL)P*(TAF)P*(A5L)P*(TAF)P*(A5L)P*(A5L) P*(TAF)P*(GFL)P*(GFL))-3')…
Structure
solution nmr · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA (5'-D(*(GFL)P*(CFL)P*(TAF)P*(A5L)P*(TAF)P*(A5L)P*(A5L) P*(TAF)P*(GFL)P*(GFL))-3') | dna | 10 | — | — |
| B | RNA (5'-R(*CP*CP*AP*UP*UP*AP*UP*AP*GP*C)-3') | rna | 10 | — | — |
Interfaces
1 interface between chains.
- A–B · 474 Ų buried · 42 hydrogen bonds · nucleic-nucleic
Modifications
Observed in the structure: 10 modified (nucleotide modification).
Compared structures
- 2KP4 · Structure of 2'F-ANA/RNA hybrid duplex · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 2KP4 · PDBe 2KP4
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