Research workbench

NMR solution structures of fully oxidised cytochrome C3 from desulfovibrio desulfuricans atcc 27774

Analyse NMR solution structures of fully oxidised cytochrome C3 from desulfovibrio… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2KMY
Type: protein
Length: 107 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Cytochrome C3
UniProt: Q9L915
Ligands: HEC
Pockets: 1 · best druggability 0.75

Structure

solution nmr · 1 distinct chain · 15% helix, 7% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Cytochrome C3	protein	107	15% helix, 7% strand	Q9L915

Ligands and binding sites

HEC · Heme C · ligand · 4 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	845	0.75	0.79	71	HEC

Modifications

Observed in the structure: 8 cofactor (heme c attachment).

Compared structures

2KMY · NMR Solution structures of fully oxidised cytochrome c3 from Desulfovibrio desulfuricans… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9L915
Elsewhere: RCSB PDB 2KMY · PDBe 2KMY · UniProt Q9L915

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.