Research workbench
Solution NMR structure of protein yutd from B.SUBTILIS, northeast structural genomics consortium target SR232
Analyse Solution NMR structure of protein yutd from B.SUBTILIS, northeast structural… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2KL5
- Type
- protein
- Length
- 110 residues
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uncharacterized protein yutd
- UniProt
- O32127
- Pockets
- 2 · best druggability 0.32
Structure
solution nmr · 1 distinct chain · 17% helix, 25% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Uncharacterized protein yutd | protein | 110 | 17% helix, 25% strand | O32127 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 60 | 0.32 | 0.76 | 17 | empty |
| 2 | 78 | 0.31 | 0.73 | 17 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 2KL5 · Solution NMR Structure of protein yutD from B.subtilis, Northeast Structural Genomics… · the same entry in another collection · chain A against A, TM-score 1.00
- O32127 · AlphaFold monomer V2.0 prediction for putative antitoxin yutd (O32127) · a predicted model of the same protein · chain A against A, TM-score 0.69
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O32127
- Elsewhere: RCSB PDB 2KL5 · PDBe 2KL5 · UniProt O32127
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