Research workbench
Channel domain of BM2 protein from influenza B virus
Analyse Channel domain of BM2 protein from influenza B virus in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2KIX
- Type
- protein
- Length
- 132 residues
- Chains
- 4
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- BM2 protein
- UniProt
- B4UQM4
- Pockets
- 2 · best druggability 0.82
Structure
solution nmr · 1 distinct chain · 76% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D | BM2 protein | protein | 33 | 76% helix, 0% strand | B4UQM4 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1093 | 0.82 | 0.83 | 77 | empty |
| 2 | 51 | 0.29 | 0.75 | 10 | empty |
Interfaces
4 interfaces between chains.
- A–B · 475 Ų buried · 2 hydrogen bonds · protein-protein
- C–D · 414 Ų buried · 0 hydrogen bonds · protein-protein
- B–C · 368 Ų buried · 1 hydrogen bond · protein-protein
- A–D · 334 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 2KIX · Channel domain of BM2 protein from influenza B virus · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B4UQM4
- Elsewhere: RCSB PDB 2KIX · PDBe 2KIX · UniProt B4UQM4
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.