Research workbench
NMR-rdc / xray structure of E. COLI HSP70 (dnak) chaperone (1-605) complexed with ADP and substrate
Analyse NMR-rdc / xray structure of E. COLI HSP70 (dnak) chaperone (1-605) complexed… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2KHO
- Type
- protein
- Length
- 600 residues
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Heat shock protein 70
- UniProt
- P0A6Y8
- Pockets
- 4 · best druggability 0.77
Structure
solution nmr · 1 distinct chain · 37% helix, 28% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Heat shock protein 70 | protein | 600 | 37% helix, 28% strand | P0A6Y8 |
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 962 | 0.77 | 0.79 | 82 | empty |
| 2 | 182 | 0.56 | 0.80 | 23 | empty |
| 3 | 162 | 0.45 | 0.75 | 23 | empty |
| 4 | 125 | 0.37 | 0.73 | 17 | empty |
Compared structures
- 2KHO · NMR-RDC / XRAY structure of E. coli HSP70 (DNAK) chaperone (1-605) complexed with ADP and… · the same entry in another collection · chain A against A, TM-score 1.00
- P0A6Y8 · AlphaFold monomer V2.0 prediction for chaperone protein dnak (P0A6Y8) · a predicted model of the same protein · chain A against A, TM-score 0.56
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0A6Y8
- Elsewhere: RCSB PDB 2KHO · PDBe 2KHO · UniProt P0A6Y8
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