Research workbench
Structure of the second qrrm domain of hnrnp F in complex with a agggau G-tract RNA
Analyse Structure of the second qrrm domain of hnrnp F in complex with a agggau G-tract… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2KG0
- Type
- protein + RNA
- Length
- 98 residues
- Chains
- 2
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Heterogeneous nuclear ribonucleoprotein F; 5'-R(*AP*GP*GP*GP*AP*U)-3'
- UniProt
- P52597
Structure
solution nmr · 2 distinct chains · 23% helix, 26% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Heterogeneous nuclear ribonucleoprotein F | protein | 92 | 23% helix, 26% strand | P52597 |
| B | 5'-R(*AP*GP*GP*GP*AP*U)-3' | rna | 6 | — | — |
Interfaces
1 interface between chains.
- A–B · 574 Ų buried · 18 hydrogen bonds · protein-nucleic
Compared structures
- 2KG0 · Structure of the second qRRM domain of hnRNP F in complex with a AGGGAU G-tract RNA · the same entry in another collection · chain A against A, TM-score 1.00
- P52597 · AlphaFold monomer V2.0 prediction for heterogeneous nuclear ribonucleoprotein F (P52597) · a predicted model of the same protein · chain A against A, TM-score 0.86
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P52597
- Elsewhere: RCSB PDB 2KG0 · PDBe 2KG0 · UniProt P52597
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