Research workbench
Solution structure of ribosomal protein S8E from methanothermobacter thermautotrophicus, northeaststructural genomics consortium (nesg) target TR71D
Analyse Solution structure of ribosomal protein S8E from methanothermobacter… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2KCY
- Type
- protein
- Length
- 98 residues
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 30S ribosomal protein S8E
- UniProt
- O26309
- Pockets
- 2 · best druggability 0.59
Structure
solution nmr · 1 distinct chain · 0% helix, 26% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 30S ribosomal protein S8E | protein | 98 | 0% helix, 26% strand | O26309 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 322 | 0.59 | 0.77 | 31 | empty |
| 2 | 50 | 0.24 | 0.73 | 16 | empty |
Compared structures
- 2KCY · SOLUTION STRUCTURE OF RIBOSOMAL PROTEIN S8E FROM Methanothermobacter thermautotrophicus… · the same entry in another collection · chain A against A, TM-score 1.00
- O26309 · AlphaFold monomer V2.0 prediction for 30S ribosomal protein S8E (O26309) · a predicted model of the same protein · chain A against A, TM-score 0.56
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O26309
- Elsewhere: RCSB PDB 2KCY · PDBe 2KCY · UniProt O26309
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