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Homology-based model of apo cib (calcium-and integrin-binding protein)

Analyse Homology-based model of apo cib (calcium-and integrin-binding protein) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1DGV
Type: protein
Length: 183 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Apo cib
UniProt: Q99828
Pockets: 1 · best druggability 0.62

Structure

solution nmr · 1 distinct chain · 46% helix, 2% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Apo cib	protein	183	46% helix, 2% strand	Q99828

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	342	0.62	0.78	32	empty

Compared structures

1DGV · Homology-based model of apo cib (calcium-and integrin-binding protein) · the same entry in another collection · chain A against A, TM-score 1.00
Q99828 · AlphaFold monomer V2.0 prediction for calcium and integrin-binding protein 1 (Q99828) · a predicted model of the same protein · chain A against A, TM-score 0.64

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q99828
Elsewhere: RCSB PDB 1DGV · PDBe 1DGV · UniProt Q99828

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