Research workbench
Solution structure of human mcl-1 complexed with human BID_BH3 peptide
Analyse Solution structure of human mcl-1 complexed with human BID_BH3 peptide in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2KBW
- Type
- protein
- Length
- 191 residues
- Chains
- 2
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Induced myeloid leukemia cell differentiation protein mcl- 1; BH3-interacting domain…
- UniProt
- Q07820, P55957
- Pockets
- 2 · best druggability 0.72
Structure
solution nmr · 2 distinct chains · 70% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Induced myeloid leukemia cell differentiation protein mcl- 1 | protein | 160 | 71% helix, 0% strand | Q07820 |
| B | BH3-interacting domain death agonist | protein | 31 | 68% helix, 0% strand | P55957 |
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 100 | 0.72 | 0.93 | 26 | empty |
| 2 | 297 | 0.56 | 0.77 | 33 | empty |
Interfaces
1 interface between chains.
- A–B · 1081 Ų buried · 7 hydrogen bonds · protein-protein
Compared structures
- 2KBW · Solution Structure of human Mcl-1 complexed with human Bid_BH3 peptide · the same entry in another collection · chain A against A, TM-score 1.00
- Q07820 · AlphaFold monomer V2.0 prediction for induced myeloid leukemia cell differentiation… · a predicted model of the same protein · chain A against A, TM-score 0.87
- P55957 · AlphaFold monomer V2.0 prediction for BH3-interacting domain death agonist (P55957) · a predicted model of the same protein · chain B against A, TM-score 0.64
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q07820
- Every structure of UniProt P55957
- Elsewhere: RCSB PDB 2KBW · PDBe 2KBW · UniProt Q07820 · UniProt P55957
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