Research workbench
Magic-angle-spinning solid-state NMR structure of influenza a M2 transmembrane domain
Analyse Magic-angle-spinning solid-state NMR structure of influenza a M2 transmembrane… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2KAD
- Type
- protein
- Length
- 100 residues
- Chains
- 4
- Method
- solid-state nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Transmembrane peptide of matrix protein 2
- UniProt
- O70632
- Ligands
- 308
- Pockets
- 1 · best druggability 0.70
Structure
solid-state nmr · 1 distinct chain · 92% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D | Transmembrane peptide of matrix protein 2 | protein | 25 | 92% helix, 0% strand | O70632 |
Ligands and binding sites
- 308 · (3S,5S,7S)-tricyclo[3.3.1.1~3,7~]decan-1-amine · ligand · chains A, B, C, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 412 | 0.70 | 0.81 | 46 | 308 |
Interfaces
4 interfaces between chains.
- A–D · 343 Ų buried · 1 hydrogen bond · protein-protein
- B–C · 342 Ų buried · 1 hydrogen bond · protein-protein
- A–C · 342 Ų buried · 1 hydrogen bond · protein-protein
- B–D · 340 Ų buried · 1 hydrogen bond · protein-protein
Compared structures
- 2KAD · Magic-Angle-Spinning Solid-State NMR Structure of Influenza A M2 Transmembrane Domain · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O70632
- Elsewhere: RCSB PDB 2KAD · PDBe 2KAD · UniProt O70632
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