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Structure of the core binding domain of SIGMA54
Analyse Structure of the core binding domain of SIGMA54 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2K9M
- Type
- protein
- Length
- 130 residues
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- RNA polymerase sigma factor rpon
- UniProt
- O66858
- Pockets
- 2 · best druggability 0.51
Structure
solution nmr · 1 distinct chain · 54% helix, 2% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | RNA polymerase sigma factor rpon | protein | 130 | 54% helix, 2% strand | O66858 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 111 | 0.51 | 0.81 | 26 | empty |
| 2 | 76 | 0.40 | 0.78 | 17 | empty |
Compared structures
- 2K9M · Structure of the Core Binding Domain of sigma54 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O66858
- Elsewhere: RCSB PDB 2K9M · PDBe 2K9M · UniProt O66858
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