Research workbench

CIN85 SH3-C domain in complex with ubiquitin

Analyse CIN85 SH3-C domain in complex with ubiquitin in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2K6D
Type: protein
Length: 138 residues
Chains: 2
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: SH3 domain-containing kinase-binding protein 1; Ubiquitin
UniProt: Q96B97, P62988

Structure

solution nmr · 2 distinct chains · 15% helix, 28% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	SH3 domain-containing kinase-binding protein 1	protein	62	5% helix, 39% strand	Q96B97
B	Ubiquitin	protein	76	24% helix, 20% strand	P62988

Interfaces

1 interface between chains.

A–B · 852 Å² buried · 12 hydrogen bonds · protein-protein

Compared structures

2K6D · CIN85 Sh3-C domain in complex with ubiquitin · the same entry in another collection · chain A against A, TM-score 1.00
Q96B97 · AlphaFold monomer V2.0 prediction for SH3 domain-containing kinase- binding protein 1… · a predicted model of the same protein · chain A against A, TM-score 0.73

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q96B97
Every structure of UniProt P62988
Elsewhere: RCSB PDB 2K6D · PDBe 2K6D · UniProt Q96B97 · UniProt P62988

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