Research workbench
Solution structure of the HIV-2 myristoylated matrix protein
Analyse Solution structure of the HIV-2 myristoylated matrix protein in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2K4H
- Type
- protein
- Length
- 134 residues
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- HIV-2 myristoylated matrix protein
- UniProt
- P04584
- Ligands
- MYR
- Pockets
- 2 · best druggability 0.53
Structure
solution nmr · 1 distinct chain · 54% helix, 2% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | HIV-2 myristoylated matrix protein | protein | 134 | 54% helix, 2% strand | P04584 |
Ligands and binding sites
- MYR · Myristic acid · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 171 | 0.53 | 0.79 | 18 | MYR |
| 2 | 69 | 0.32 | 0.75 | 11 | empty |
Modifications
Observed in the structure: 1 lipid (myristoylation).
Compared structures
- 2K4H · Solution structure of the HIV-2 myristoylated Matrix protein · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P04584
- Elsewhere: RCSB PDB 2K4H · PDBe 2K4H · UniProt P04584
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