Research workbench
Trnaphe-based homology model for trnaval refined against base N-H rdcs in two media and saxs data
Analyse Trnaphe-based homology model for trnaval refined against base N-H rdcs in two… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2K4C
- Type
- RNA
- Length
- 76 nucleotides
- Chains
- 1
- Method
- solution nmr; solution scattering
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 76-mer
- Pockets
- 3 · best druggability 0.60
Structure
solution nmr; solution scattering · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 76-mer | rna | 76 | — | — |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 539 | 0.60 | 0.75 | 26 | empty |
| 2 | 164 | 0.49 | 0.78 | 13 | empty |
| 3 | 277 | 0.48 | 0.74 | 23 | empty |
Compared structures
- 2K4C · tRNAPhe-based homology model for tRNAVal refined against base N-H RDCs in two media and… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 2K4C · PDBe 2K4C
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