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Solution structure of the C103S mutant of the N-terminal domain of dsbd from neisseria meningitidis

Analyse Solution structure of the C103S mutant of the N-terminal domain of dsbd from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2K0R
Type: protein
Length: 128 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: THIOL:DISULFIDE interchange protein dsbd
EC: 1.8.1.8
UniProt: Q9JYM0
Pockets: 1 · best druggability 0.34

Structure

solution nmr · 1 distinct chain · 2% helix, 48% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	THIOL:DISULFIDE interchange protein dsbd (EC 1.8.1.8)	protein	128	2% helix, 48% strand	Q9JYM0

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	56	0.34	0.77	13	empty

Compared structures

2K0R · Solution structure of the C103S mutant of the N-terminal Domain of DsbD from Neisseria… · the same entry in another collection · chain A against A, TM-score 1.00
Q9JYM0 · AlphaFold monomer V2.0 prediction for THIOL:DISULFIDE interchange protein dsbd (Q9JYM0) · a predicted model of the same protein · chain A against A, TM-score 0.83

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9JYM0
Elsewhere: RCSB PDB 2K0R · PDBe 2K0R · UniProt Q9JYM0

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