Research workbench
Solution NMR structure of selenium-binding protein from methanococcus vannielii
Analyse Solution NMR structure of selenium-binding protein from methanococcus vannielii in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2JZ7
- Type
- protein
- Length
- 405 residues
- Chains
- 5
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Selenium binding protein
- UniProt
- Q5UBU1
- Pockets
- 7 · best druggability 0.85
Structure
solution nmr · 1 distinct chain · 17% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E | Selenium binding protein | protein | 81 | 17% helix, 21% strand | Q5UBU1 |
Pockets
7 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1167 | 0.85 | 0.86 | 129 | empty |
| 2 | 225 | 0.53 | 0.77 | 31 | empty |
| 3 | 107 | 0.42 | 0.77 | 22 | empty |
| 4 | 53 | 0.38 | 0.80 | 20 | empty |
| 5 | 50 | 0.35 | 0.79 | 18 | empty |
Interfaces
7 interfaces between chains.
- A–E · 666 Ų buried · 7 hydrogen bonds · protein-protein
- C–D · 626 Ų buried · 2 hydrogen bonds · protein-protein
- B–C · 589 Ų buried · 7 hydrogen bonds · protein-protein
- A–B · 575 Ų buried · 6 hydrogen bonds · protein-protein
- D–E · 553 Ų buried · 9 hydrogen bonds · protein-protein
Compared structures
- 2JZ7 · Solution NMR structure of selenium-binding protein from Methanococcus Vannielii · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5UBU1
- Elsewhere: RCSB PDB 2JZ7 · PDBe 2JZ7 · UniProt Q5UBU1
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.